- General Usage
On the proteins panel, you can review the ratios between light, (medium) and heavy peptides for all quantified protein groups. Various QC metrics are available on the Charts menu for exploring the distribution of protein ratios and the agreement across replicates.
In the left hand menu, various additional columns can be enabled/disabled, including normalised and raw ratios, selecting different numerators and denominators and statistics. Double-clicking a given protein group will shift back to the Peptide panel to display the peptides used for quantification for this particular protein.